pax3 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pax3

Paired box 3b. (176 aa)

Predicted Functional Partners:

TIMM22

0.713

sox10

0.691

ctnnb1

0.663

foxd3

0.642

MITF

0.617

tyrp1

0.614

LOC111566142

0.612

timm10

0.573

sdhd

0.566

timm9

0.558

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111566142	MITF	ENSAOCP00000019373	ENSAOCP00000031204	Melanocyte inducing transcription factor a.	Melanocyte inducing transcription factor.	0.903
LOC111566142	ctnnb1	ENSAOCP00000019373	ENSAOCP00000014206	Melanocyte inducing transcription factor a.	Catenin (cadherin-associated protein), beta 1.	0.629
LOC111566142	foxd3	ENSAOCP00000019373	ENSAOCP00000021693	Melanocyte inducing transcription factor a.	Forkhead box D3.	0.770
LOC111566142	pax3	ENSAOCP00000019373	ENSAOCP00000001735	Melanocyte inducing transcription factor a.	Paired box 3b.	0.612
LOC111566142	sox10	ENSAOCP00000019373	ENSAOCP00000000344	Melanocyte inducing transcription factor a.	SRY-box transcription factor 10.	0.823
LOC111566142	tyrp1	ENSAOCP00000019373	ENSAOCP00000026749	Melanocyte inducing transcription factor a.	Tyrosinase related protein 1.	0.880
MITF	LOC111566142	ENSAOCP00000031204	ENSAOCP00000019373	Melanocyte inducing transcription factor.	Melanocyte inducing transcription factor a.	0.903
MITF	ctnnb1	ENSAOCP00000031204	ENSAOCP00000014206	Melanocyte inducing transcription factor.	Catenin (cadherin-associated protein), beta 1.	0.608
MITF	pax3	ENSAOCP00000031204	ENSAOCP00000001735	Melanocyte inducing transcription factor.	Paired box 3b.	0.617
MITF	tyrp1	ENSAOCP00000031204	ENSAOCP00000026749	Melanocyte inducing transcription factor.	Tyrosinase related protein 1.	0.684
TIMM22	pax3	ENSAOCP00000026721	ENSAOCP00000001735	Translocase of inner mitochondrial membrane 22.	Paired box 3b.	0.713
TIMM22	sdhd	ENSAOCP00000026721	ENSAOCP00000018460	Translocase of inner mitochondrial membrane 22.	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q); Belongs to the CybS family.	0.873
TIMM22	timm10	ENSAOCP00000026721	ENSAOCP00000013517	Translocase of inner mitochondrial membrane 22.	Translocase of inner mitochondrial membrane 10 homolog (yeast).	0.977
TIMM22	timm9	ENSAOCP00000026721	ENSAOCP00000020551	Translocase of inner mitochondrial membrane 22.	zf-Tim10_DDP domain-containing protein.	0.975
ctnnb1	LOC111566142	ENSAOCP00000014206	ENSAOCP00000019373	Catenin (cadherin-associated protein), beta 1.	Melanocyte inducing transcription factor a.	0.629
ctnnb1	MITF	ENSAOCP00000014206	ENSAOCP00000031204	Catenin (cadherin-associated protein), beta 1.	Melanocyte inducing transcription factor.	0.608
ctnnb1	foxd3	ENSAOCP00000014206	ENSAOCP00000021693	Catenin (cadherin-associated protein), beta 1.	Forkhead box D3.	0.405
ctnnb1	pax3	ENSAOCP00000014206	ENSAOCP00000001735	Catenin (cadherin-associated protein), beta 1.	Paired box 3b.	0.663
ctnnb1	sox10	ENSAOCP00000014206	ENSAOCP00000000344	Catenin (cadherin-associated protein), beta 1.	SRY-box transcription factor 10.	0.712
foxd3	LOC111566142	ENSAOCP00000021693	ENSAOCP00000019373	Forkhead box D3.	Melanocyte inducing transcription factor a.	0.770