Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111582583Von Willebrand factor A domain containing 5B2. (1113 aa)    
Predicted Functional Partners:
lrwd1
Leucine-rich repeats and WD repeat domain containing 1.
    
 
 0.752
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.730
ticrr
Treslin_N domain-containing protein.
    
 
 0.728
rfc4
Replication factor C (activator 1) 4.
   
 0.723
xrcc5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
   
 
 0.718
rfc3
Replication factor C (activator 1) 3.
   
 0.716
rfc5
Replication factor C (activator 1) 5.
   
 0.711
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
   
 
 0.707
LOC111564376
Poly (ADP-ribose) glycohydrolase a.
    
 0.695
LOC111570201
Poly (ADP-ribose) glycohydrolase, like.
    
 0.695
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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