STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtf2Replication termination factor 2. (304 aa)    
Predicted Functional Partners:
ccdc130
Coiled-coil domain containing 130.
      
 0.609
zfand4
Zinc finger, AN1-type domain 4.
   
  
 0.605
rtf1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
  
 0.601
spata16
Uncharacterized protein.
      
 0.577
ubxn7
UBX domain protein 7.
      
 0.575
ess2
Ess-2 splicing factor homolog.
      
 0.572
prpf18
PRP18 pre-mRNA processing factor 18 homolog (yeast).
      
 0.571
trmt1
tRNA (guanine(26)-N(2))-dimethyltransferase.
    
   0.557
LOC111583553
Necdin-like 2.
      
 0.527
pkd1
Polycystic kidney disease 1a.
   
  
 0.520
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.