Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rtf2Replication termination factor 2. (304 aa)    
Predicted Functional Partners:
trmt1
tRNA (guanine(26)-N(2))-dimethyltransferase.
    
   0.886
yars1
Tyrosine--tRNA ligase.
    
   0.861
zfand4
Zinc finger, AN1-type domain 4.
      
 0.827
rtf1
RTF1 homolog, Paf1/RNA polymerase II complex component.
      
 0.748
spata16
Uncharacterized protein.
      
 0.743
prrx1
Paired related homeobox 1a.
      
 0.655
nrip3
Asp_protease domain-containing protein.
      
 0.617
rpl35
Ribosomal protein L35.
      
 0.614
rnf17
Ring finger protein 17.
      
 0.612
ccdc130
Coiled-coil domain containing 130.
      
 0.612
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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