Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC111581294DEAD-box helicase 17; Belongs to the DEAD box helicase family. (648 aa)    
Predicted Functional Partners:
pes1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.896
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 0.877
ENSAOCP00000016807
Uncharacterized protein.
   
 0.877
sf1
Splicing factor 1.
   
 0.837
dkc1
Dyskeratosis congenita 1, dyskerin.
  
 
 0.831
drosha
Uncharacterized protein.
  
 
 0.824
ebna1bp2
EBNA1 binding protein 2.
   
 0.810
rbm34
RNA binding motif protein 34.
   
 0.806
alyref
Aly/REF export factor.
   
 0.802
LOC111588359
RNA binding motif protein 39b.
   
 0.798
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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