LOC111581294 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111581294

DEAD-box helicase 17; Belongs to the DEAD box helicase family. (648 aa)

Predicted Functional Partners:

pes1

0.878

sf3b1

0.819

ebna1bp2

0.814

nop58

0.787

mtrex

0.782

dkc1

0.775

wdr12

0.764

LOC111567787

0.740

alyref

0.736

gnl3

0.735

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111567787	LOC111581294	ENSAOCP00000004337	ENSAOCP00000001779	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	0.740
LOC111567787	dkc1	ENSAOCP00000004337	ENSAOCP00000009068	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Dyskeratosis congenita 1, dyskerin.	0.903
LOC111567787	ebna1bp2	ENSAOCP00000004337	ENSAOCP00000002218	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	EBNA1 binding protein 2.	0.992
LOC111567787	gnl3	ENSAOCP00000004337	ENSAOCP00000008835	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.990
LOC111567787	mtrex	ENSAOCP00000004337	ENSAOCP00000007966	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Mtr4 exosome RNA helicase.	0.964
LOC111567787	nop58	ENSAOCP00000004337	ENSAOCP00000011453	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	NOP58 ribonucleoprotein homolog (yeast).	0.972
LOC111567787	pes1	ENSAOCP00000004337	ENSAOCP00000005336	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.998
LOC111567787	wdr12	ENSAOCP00000004337	ENSAOCP00000024816	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.993
LOC111581294	LOC111567787	ENSAOCP00000001779	ENSAOCP00000004337	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.740
LOC111581294	alyref	ENSAOCP00000001779	ENSAOCP00000009823	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	Aly/REF export factor.	0.736
LOC111581294	dkc1	ENSAOCP00000001779	ENSAOCP00000009068	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	Dyskeratosis congenita 1, dyskerin.	0.775
LOC111581294	ebna1bp2	ENSAOCP00000001779	ENSAOCP00000002218	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	EBNA1 binding protein 2.	0.814
LOC111581294	gnl3	ENSAOCP00000001779	ENSAOCP00000008835	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.735
LOC111581294	mtrex	ENSAOCP00000001779	ENSAOCP00000007966	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	Mtr4 exosome RNA helicase.	0.782
LOC111581294	nop58	ENSAOCP00000001779	ENSAOCP00000011453	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	NOP58 ribonucleoprotein homolog (yeast).	0.787
LOC111581294	pes1	ENSAOCP00000001779	ENSAOCP00000005336	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.878
LOC111581294	sf3b1	ENSAOCP00000001779	ENSAOCP00000020385	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	Splicing factor 3b, subunit 1.	0.819
LOC111581294	wdr12	ENSAOCP00000001779	ENSAOCP00000024816	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.764
alyref	LOC111581294	ENSAOCP00000009823	ENSAOCP00000001779	Aly/REF export factor.	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	0.736
alyref	mtrex	ENSAOCP00000009823	ENSAOCP00000007966	Aly/REF export factor.	Mtr4 exosome RNA helicase.	0.958