STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111562656Contactin 3b. (1012 aa)    
Predicted Functional Partners:
ptprg
Carbonic anhydrase XVI b.
    
 
 0.582
LOC111578637
Uncharacterized protein.
    
 
 0.582
LOC111564442
Neurofascin homolog (chicken) a.
   
 0.570
chl1
Cell adhesion molecule L1-like b.
   
 0.570
LOC111580531
Neuronal cell adhesion molecule a.
   
 0.570
LOC111571153
Uncharacterized protein.
   
 0.570
LOC111576530
L1 cell adhesion molecule, paralog a.
   
 0.570
NRCAM
Neuronal cell adhesion molecule.
   
 0.570
LOC111566389
Uncharacterized protein.
   
 0.570
LOC111567620
Uncharacterized protein.
   
 0.509
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.