Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gtf2h3General transcription factor IIH, polypeptide 3. (300 aa)    
Predicted Functional Partners:
ercc3
Excision repair cross-complementation group 3.
   
 0.999
LOC111570533
General transcription factor IIH subunit.
   
 0.999
gtf2h4
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
   
 0.999
ercc2
Excision repair cross-complementation group 2.
    
 0.999
gtf2h1
General transcription factor IIH, polypeptide 1.
    
 0.999
LOC111578874
General transcription factor IIH, polypeptide 5.
    
 0.989
mnat1
CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.
   
 0.989
ccnh
Cyclin H; Belongs to the cyclin family.
   
 0.986
GTF2H5
General transcription factor IIH subunit 5.
    
 0.977
gtf2e1
General transcription factor IIE, polypeptide 1, alpha.
   
 0.970
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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