STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
farsbPhenylalanyl-tRNA synthetase subunit beta; Belongs to the EF-1-beta/EF-1-delta family. (848 aa)    
Predicted Functional Partners:
farsa
Phenylalanyl-tRNA synthetase subunit alpha.
  
 0.999
LOC111587995
Phenylalanyl-tRNA synthetase 2, mitochondrial.
  
 0.993
eprs1
Glutamyl-prolyl-tRNA synthetase.
  
 
 0.976
FARS2
FDX-ACB domain-containing protein.
  
 0.938
yars1
Tyrosine--tRNA ligase.
  
  
 0.926
ENSAOCP00000004089
Ferredoxin-fold anticodon binding domain containing 1.
  
 0.925
eif2s3
Eukaryotic translation initiation factor 2, subunit 3 gamma.
  
  
 0.906
LOC111578239
Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.899
Iars
Uncharacterized protein.
  
 
 0.899
kars1
Lysine--tRNA ligase.
  
  
 0.844
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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