STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111586629Homeobox protein. (280 aa)    
Predicted Functional Partners:
LOC111573610
Forkhead box E3.
   
 
 0.443
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 
 0.439
LOC111565420
Sorting nexin 16.
      
 0.437
lrtm2
Leucine-rich repeats and transmembrane domains 2a.
   
 
 0.435
ripk2
Receptor-interacting serine-threonine kinase 2.
      
 0.424
mcm6
DNA helicase; Belongs to the MCM family.
      
 0.418
th
Tyrosine hydroxylase.
      
 0.414
nr4a2
Nuclear receptor subfamily 4, group A, member 2b.
    
 
 0.400
LOC111581942
Uncharacterized protein.
    
 
 0.400
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.