Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RIC1RIC1 homolog, RAB6A GEF complex partner 1. (1402 aa)    
Predicted Functional Partners:
rgp1
GP1 homolog, RAB6A GEF complex partner 1.
    
 0.998
rab33b
RAB33B, member RAS oncogene family a.
    
 0.965
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
   
 0.958
avl9
AVL9 homolog (S. cerevisiase).
      
 0.906
LOC111565032
RAB6B, member RAS oncogene family a.
   
 0.876
LOC111578795
RAB6B, member RAS oncogene family.
   
 0.876
RAB41
RAB41, member RAS oncogene family.
   
 0.876
LOC111579855
Uncharacterized protein.
   
 0.876
arfrp1
ADP-ribosylation factor related protein 1.
    
 0.870
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.836
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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