Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111578296LSM14A mRNA processing body assembly factor a. (493 aa)    
Predicted Functional Partners:
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
   
 
 0.918
edc4
Enhancer of mRNA decapping 4.
    
 
 0.915
LOC111562609
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.889
LOC111564218
DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.
   
 
 0.889
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
   
 
 0.889
dcp1a
Decapping mRNA 1A.
   
 
 0.822
LOC111577675
Uncharacterized protein.
    
 
 0.786
LOC111587610
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
    
 
 0.786
dcp2
Decapping mRNA 2.
   
 
 0.782
dcp1b
Decapping mRNA 1B.
   
 
 0.779
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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