STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111578296LSM14A mRNA processing body assembly factor a. (493 aa)    
Predicted Functional Partners:
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
   
 
 0.893
dcp2
Decapping mRNA 2.
   
 
 0.808
LOC111562609
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.803
LOC111564218
DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.
   
 
 0.803
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
   
 
 0.803
LOC111577675
Uncharacterized protein.
    
 
 0.697
LOC111587610
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
    
 
 0.697
dcp1a
Decapping mRNA 1A.
    
 
 0.682
dcp1b
Decapping mRNA 1B.
    
 
 0.681
edc4
Enhancer of mRNA decapping 4.
    
 
 0.625
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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