STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab27aRAB27A, member RAS oncogene family. (220 aa)    
Predicted Functional Partners:
LOC111570308
Melanophilin a.
    
 0.899
chm
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.806
LOC111567753
Synaptotagmin-like 1.
   
 0.786
ENSAOCP00000015077
RabBD domain-containing protein.
   
 0.786
LOC111572710
Synaptotagmin-like 2a.
   
 0.786
LOC111565112
Uncharacterized protein.
   
 0.786
cd63
Tetraspanin.
     
 0.780
LOC111584443
Uncharacterized protein.
    
 0.731
sytl5
Synaptotagmin-like 5.
    
 0.731
sytl4
Synaptotagmin-like 4.
    
 0.731
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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