micall1 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

micall1

MICAL-like 1a. (921 aa)

Predicted Functional Partners:

CASK

0.545

LOC111575429

0.545

capzb

0.514

LOC111585014

0.458

ENSAOCP00000012646

0.458

ENSAOCP00000016650

0.458

LOC111574951

0.458

ENSAOCP00000021205

0.458

ENSAOCP00000021220

0.458

parva

0.435

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASK	ENSAOCP00000012646	ENSAOCP00000018643	ENSAOCP00000012646	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.433
CASK	ENSAOCP00000016650	ENSAOCP00000018643	ENSAOCP00000016650	Uncharacterized protein; Belongs to the MAGUK family.	EH domain-containing protein.	0.433
CASK	ENSAOCP00000021205	ENSAOCP00000018643	ENSAOCP00000021205	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.433
CASK	ENSAOCP00000021220	ENSAOCP00000018643	ENSAOCP00000021220	Uncharacterized protein; Belongs to the MAGUK family.	DH domain-containing protein.	0.433
CASK	LOC111574951	ENSAOCP00000018643	ENSAOCP00000019383	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.433
CASK	LOC111575429	ENSAOCP00000018643	ENSAOCP00000021285	Uncharacterized protein; Belongs to the MAGUK family.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.730
CASK	LOC111585014	ENSAOCP00000018643	ENSAOCP00000005197	Uncharacterized protein; Belongs to the MAGUK family.	Intersectin 2b.	0.433
CASK	micall1	ENSAOCP00000018643	ENSAOCP00000001838	Uncharacterized protein; Belongs to the MAGUK family.	MICAL-like 1a.	0.545
ENSAOCP00000012646	CASK	ENSAOCP00000012646	ENSAOCP00000018643	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.433
ENSAOCP00000012646	ENSAOCP00000016650	ENSAOCP00000012646	ENSAOCP00000016650	Uncharacterized protein.	EH domain-containing protein.	0.953
ENSAOCP00000012646	ENSAOCP00000021205	ENSAOCP00000012646	ENSAOCP00000021205	Uncharacterized protein.	Uncharacterized protein.	0.952
ENSAOCP00000012646	ENSAOCP00000021220	ENSAOCP00000012646	ENSAOCP00000021220	Uncharacterized protein.	DH domain-containing protein.	0.952
ENSAOCP00000012646	LOC111574951	ENSAOCP00000012646	ENSAOCP00000019383	Uncharacterized protein.	Uncharacterized protein.	0.952
ENSAOCP00000012646	LOC111575429	ENSAOCP00000012646	ENSAOCP00000021285	Uncharacterized protein.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.433
ENSAOCP00000012646	LOC111585014	ENSAOCP00000012646	ENSAOCP00000005197	Uncharacterized protein.	Intersectin 2b.	0.952
ENSAOCP00000012646	micall1	ENSAOCP00000012646	ENSAOCP00000001838	Uncharacterized protein.	MICAL-like 1a.	0.458
ENSAOCP00000016650	CASK	ENSAOCP00000016650	ENSAOCP00000018643	EH domain-containing protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.433
ENSAOCP00000016650	ENSAOCP00000012646	ENSAOCP00000016650	ENSAOCP00000012646	EH domain-containing protein.	Uncharacterized protein.	0.953
ENSAOCP00000016650	ENSAOCP00000021205	ENSAOCP00000016650	ENSAOCP00000021205	EH domain-containing protein.	Uncharacterized protein.	0.952
ENSAOCP00000016650	ENSAOCP00000021220	ENSAOCP00000016650	ENSAOCP00000021220	EH domain-containing protein.	DH domain-containing protein.	0.952