Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sgpl1Sphingosine-1-phosphate lyase 1. (564 aa)    
Predicted Functional Partners:
LOC111566662
Si:ch211-212g7.6.
    
 0.986
sgpp1
acidPPc domain-containing protein.
    
 0.986
SGPP2
Sphingosine-1-phosphate phosphatase 2.
    
 0.980
LOC111574733
Sphingosine kinase 2.
  
 0.980
SPHK1
Sphingosine kinase 1.
  
 0.980
LOC111567714
Phospholipid phosphatase 2a.
    
 0.950
LOC111573563
Phospholipid phosphatase 2b.
    
 0.947
LOC111573484
acidPPc domain-containing protein.
    
 0.943
plpp1
Phospholipid phosphatase 1a.
    
 0.943
LOC111573677
Phosphatidic acid phosphatase type 2D.
    
 0.925
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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