Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111571971Nucleophosmin 1a. (231 aa)    
Predicted Functional Partners:
rpl4
Ribosomal protein L4.
   
 
 0.970
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
   0.954
rpl6
Ribosomal protein L6.
   
 
 0.952
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 
 0.947
ncl
Nucleolin.
   
 
 0.945
LOC111585505
Uncharacterized protein.
   
 
 0.945
rpl14
Ribosomal protein L14.
   
   0.931
rpl35
Ribosomal protein L35.
   
   0.931
RPL5
Ribosomal protein L5b.
   
 
 0.928
RPL5-2
Ribosomal protein L5.
   
 
 0.928
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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