Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSAOCP00000001905Neurogenin 3. (226 aa)    
Predicted Functional Partners:
nkx6-1
NK6 homeobox 1.
   
  
 0.792
LOC111586686
NK2 homeobox 2a.
   
 0.759
LOC111582656
NK2 homeobox 2b.
   
 0.759
onecut1
One cut domain family member.
   
 0.722
LOC111579575
Insulinoma-associated 1b.
   
 0.709
INSM2
INSM transcriptional repressor 2.
   
 0.709
insm1
Insulinoma-associated 1a.
   
 0.709
pdx1
Pancreatic and duodenal homeobox 1.
   
 0.703
LOC111575748
Glucagon b.
      
 0.695
rfx6
Regulatory factor X, 6.
   
  
 0.695
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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