LOC111585172 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC111585172

Rho GTPase activating protein 36. (361 aa)

Predicted Functional Partners:

rab12

0.707

LOC111564529

0.627

mtor

0.619

rhbdl1

0.615

ENSAOCP00000004206

0.611

kif11

0.604

yipf5

0.604

LOC111569575

0.600

ttk

0.577

rnd3

0.575

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAOCP00000004206	LOC111585172	ENSAOCP00000004206	ENSAOCP00000001910	Uncharacterized protein.	Rho GTPase activating protein 36.	0.611
ENSAOCP00000004206	kif11	ENSAOCP00000004206	ENSAOCP00000011145	Uncharacterized protein.	Kinesin family member 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.982
ENSAOCP00000004206	ttk	ENSAOCP00000004206	ENSAOCP00000019357	Uncharacterized protein.	Ttk protein kinase.	0.962
LOC111564529	LOC111585172	ENSAOCP00000031746	ENSAOCP00000001910	Zgc:153738.	Rho GTPase activating protein 36.	0.627
LOC111564529	yipf5	ENSAOCP00000031746	ENSAOCP00000012509	Zgc:153738.	Protein YIPF.	0.662
LOC111569575	LOC111585172	ENSAOCP00000002318	ENSAOCP00000001910	Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c.	Rho GTPase activating protein 36.	0.600
LOC111585172	ENSAOCP00000004206	ENSAOCP00000001910	ENSAOCP00000004206	Rho GTPase activating protein 36.	Uncharacterized protein.	0.611
LOC111585172	LOC111564529	ENSAOCP00000001910	ENSAOCP00000031746	Rho GTPase activating protein 36.	Zgc:153738.	0.627
LOC111585172	LOC111569575	ENSAOCP00000001910	ENSAOCP00000002318	Rho GTPase activating protein 36.	Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c.	0.600
LOC111585172	kif11	ENSAOCP00000001910	ENSAOCP00000011145	Rho GTPase activating protein 36.	Kinesin family member 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.604
LOC111585172	mtor	ENSAOCP00000001910	ENSAOCP00000031904	Rho GTPase activating protein 36.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.619
LOC111585172	rab12	ENSAOCP00000001910	ENSAOCP00000031976	Rho GTPase activating protein 36.	RAB12, member RAS oncogene family.	0.707
LOC111585172	rhbdl1	ENSAOCP00000001910	ENSAOCP00000000880	Rho GTPase activating protein 36.	Rhomboid-related protein 1; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.	0.615
LOC111585172	rnd3	ENSAOCP00000001910	ENSAOCP00000002135	Rho GTPase activating protein 36.	Rho family GTPase 3a.	0.575
LOC111585172	ttk	ENSAOCP00000001910	ENSAOCP00000019357	Rho GTPase activating protein 36.	Ttk protein kinase.	0.577
LOC111585172	yipf5	ENSAOCP00000001910	ENSAOCP00000012509	Rho GTPase activating protein 36.	Protein YIPF.	0.604
kif11	ENSAOCP00000004206	ENSAOCP00000011145	ENSAOCP00000004206	Kinesin family member 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.982
kif11	LOC111585172	ENSAOCP00000011145	ENSAOCP00000001910	Kinesin family member 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Rho GTPase activating protein 36.	0.604
kif11	ttk	ENSAOCP00000011145	ENSAOCP00000019357	Kinesin family member 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Ttk protein kinase.	0.984
mtor	LOC111585172	ENSAOCP00000031904	ENSAOCP00000001910	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	Rho GTPase activating protein 36.	0.619