Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdlim1PDZ and LIM domain 1 (elfin). (322 aa)    
Predicted Functional Partners:
atox1
Antioxidant 1 copper chaperone.
      
 0.613
Epg5
Uncharacterized protein.
      
 0.605
SH3RF3
SH3 domain containing ring finger 3.
    
 0.580
pdlim7
PDZ and LIM domain 7.
   
 
0.576
LOC111576883
Uncharacterized protein.
 
 
 
 0.555
LOC111574919
PDZ and LIM domain 5b.
   
 
0.550
LOC111576465
PDZ and LIM domain 5a.
   
 
0.550
strbp
Spermatid perinuclear RNA binding protein.
      
 0.546
pdlim3
PDZ and LIM domain 3a.
  
  
 
0.546
LOC111563923
PDZ and LIM domain 4.
     
 
0.540
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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