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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdlim1PDZ and LIM domain 1 (elfin). (322 aa)    
Predicted Functional Partners:
parva
Parvin, alpha a.
   
 0.521
parvb
Parvin, beta.
   
 0.521
parvg
Parvin, gamma.
   
 0.521
atox1
Antioxidant 1 copper chaperone.
      
 0.507
SH3RF3
SH3 domain containing ring finger 3.
    
 0.506
vcl
Vinculin b.
   
 0.497
LOC111581406
Vinculin a.
   
 0.497
ENSAOCP00000005690
Focal_AT domain-containing protein.
    
 0.489
ENSAOCP00000005713
B41 domain-containing protein.
    
 0.489
LOC111579833
Protein tyrosine kinase 2ab; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.489
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.