Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
urodUroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (368 aa)    
Predicted Functional Partners:
uros
Uroporphyrinogen III synthase.
  
 
 0.998
cpox
Coproporphyrinogen oxidase.
  
 0.998
ppox
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
 
 0.997
hmbs
Hydroxymethylbilane synthase a.
 0.980
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
  
  
 0.968
alad
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
 
 0.967
ENSAOCP00000004469
LRAT domain containing 2.
    
   0.851
Fam84b
Zgc:110182.
    
   0.851
LOC111566437
Pumilio RNA-binding family member 2.
    
 
 0.785
pum1
Pumilio RNA-binding family member 1.
    
 
 0.785
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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