Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC111563119RasGEF domain family, member 1Bb. (589 aa)    
Predicted Functional Partners:
rasa1
RAS p21 protein activator (GTPase activating protein) 1a.
    
 
 0.628
ccnk
Cyclin K; Belongs to the cyclin family.
     
  0.526
haus8
Uncharacterized protein.
      
 0.514
LOC111585811
Unc-5 netrin receptor Db.
      
 0.509
unc5d
Unc-5 netrin receptor Da.
      
 0.509
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
    
 0.485
rftn1
Raftlin, lipid raft linker 1a.
      
 0.468
nf1
Neurofibromin 1b.
      
 0.438
glipr2
GLI pathogenesis-related 2, like; Belongs to the CRISP family.
   
  
 0.415
riok1
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
      
 0.401
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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