Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111564987Si:dkey-183n20.15. (253 aa)    
Predicted Functional Partners:
tpt1
Tumor protein, translationally-controlled 1; Belongs to the TCTP family.
      
 0.517
recql4
RecQ helicase-like 4.
    
 
 0.513
blm
BLM RecQ like helicase.
    
 
 0.513
erlin1
ER lipid raft associated 1.
    
 
 0.505
LOC111588229
PHB domain-containing protein.
    
 
 0.505
rad52
RAD52 homolog, DNA repair protein.
    
 
 0.497
GMFG
Glia maturation factor; Belongs to the actin-binding proteins ADF family. GMF subfamily.
   
  
 0.455
gmfb
Glia maturation factor; Belongs to the actin-binding proteins ADF family. GMF subfamily.
   
  
 0.455
tert
Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.
    
 
 0.414
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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