Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111575478Cyclin T2b; Belongs to the cyclin family. (610 aa)    
Predicted Functional Partners:
aff4
AF4/FMR2 family, member 4.
   
 0.993
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.
   
 0.966
LOC111575643
Uncharacterized protein.
   
 0.910
LOC111582947
Cyclin T2; Belongs to the cyclin family.
  
  
 
0.902
ccnt1
Cyclin T1; Belongs to the cyclin family.
     
 
0.900
supt5h
Transcription elongation factor SPT5.
   
 0.894
larp7
La ribonucleoprotein domain family, member 7.
   
 0.893
LOC111584505
Cyclin-dependent kinase 12.
   
 0.856
cdk13
Cyclin-dependent kinase 13.
   
 0.856
LOC111577181
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.806
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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