ENSAOCP00000001973 protein (Amphiprion ocellaris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSAOCP00000001973

Stonin-1; May be involved in the endocytic machinery. (708 aa)

Predicted Functional Partners:

LOC111567191

0.822

gtf2a1

0.749

gtf2a2

0.614

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAOCP00000001973	LOC111567191	ENSAOCP00000001973	ENSAOCP00000001977	Stonin-1; May be involved in the endocytic machinery.	General transcription factor IIA, 1-like.	0.822
ENSAOCP00000001973	gtf2a1	ENSAOCP00000001973	ENSAOCP00000030241	Stonin-1; May be involved in the endocytic machinery.	General transcription factor IIA, 1.	0.749
ENSAOCP00000001973	gtf2a2	ENSAOCP00000001973	ENSAOCP00000023156	Stonin-1; May be involved in the endocytic machinery.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.614
LOC111567191	ENSAOCP00000001973	ENSAOCP00000001977	ENSAOCP00000001973	General transcription factor IIA, 1-like.	Stonin-1; May be involved in the endocytic machinery.	0.822
LOC111567191	gtf2a1	ENSAOCP00000001977	ENSAOCP00000030241	General transcription factor IIA, 1-like.	General transcription factor IIA, 1.	0.603
LOC111567191	gtf2a2	ENSAOCP00000001977	ENSAOCP00000023156	General transcription factor IIA, 1-like.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.971
gtf2a1	ENSAOCP00000001973	ENSAOCP00000030241	ENSAOCP00000001973	General transcription factor IIA, 1.	Stonin-1; May be involved in the endocytic machinery.	0.749
gtf2a1	LOC111567191	ENSAOCP00000030241	ENSAOCP00000001977	General transcription factor IIA, 1.	General transcription factor IIA, 1-like.	0.603
gtf2a1	gtf2a2	ENSAOCP00000030241	ENSAOCP00000023156	General transcription factor IIA, 1.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.999
gtf2a2	ENSAOCP00000001973	ENSAOCP00000023156	ENSAOCP00000001973	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	Stonin-1; May be involved in the endocytic machinery.	0.614
gtf2a2	LOC111567191	ENSAOCP00000023156	ENSAOCP00000001977	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	General transcription factor IIA, 1-like.	0.971
gtf2a2	gtf2a1	ENSAOCP00000023156	ENSAOCP00000030241	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	General transcription factor IIA, 1.	0.999