Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111582576AT rich interactive domain 5A (MRF1-like). (607 aa)    
Predicted Functional Partners:
zc3h12a
Zinc finger CCCH-type containing 12A.
   
  
 0.723
LOC111564367
CAP-ZIP_m domain-containing protein.
   
  
 0.706
foxh1
Forkhead box H1.
    
   0.658
rc3h1
Ring finger and CCCH-type domains 1b.
   
  
 0.640
polr3c
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.616
polr3d
Polymerase (RNA) III (DNA directed) polypeptide D.
      
 0.616
LOC111586389
SRY-box transcription factor 5.
    
 
 0.609
LOC111587448
SRY-box transcription factor 5.
    
 
 0.609
ENSAOCP00000010121
Uncharacterized protein.
   
  
 0.587
sap30l
Sap30-like.
    
 0.572
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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