STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snx30Sorting nexin family member 30. (443 aa)    
Predicted Functional Partners:
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.851
LOC111588277
PX domain-containing protein.
   
 
 0.830
LOC111564073
PX domain-containing protein.
   
 
 0.830
bloc1s2
Biogenesis of lysosomal organelles complex-1, subunit 2.
    
 
 0.818
snx5
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 0.712
LOC111585186
Sorting nexin 6.
   
 0.712
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 
 0.693
gak
Cyclin G associated kinase.
   
 
 0.610
mecr
Mitochondrial trans-2-enoyl-CoA reductase.
   
   0.592
dtnbp1
Dystrobrevin binding protein 1b.
    
  0.583
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
Server load: low (28%) [HD]