Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmlheTrimethyllysine hydroxylase, epsilon. (464 aa)    
Predicted Functional Partners:
aifm2
Apoptosis inducing factor mitochondria associated 2.
      
 0.910
cdkal1
CDK5 regulatory subunit associated protein 1-like 1.
      
 0.903
LOC111587815
Uncharacterized protein.
      
 0.736
dennd10
DENN domain containing 10.
   
  
 0.704
SPRY3
Sprouty RTK signaling antagonist 3.
      
 0.696
LOC111585233
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.674
ENSAOCP00000015325
Solute carrier family 25 member 14; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.674
LOC111572729
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.674
CLPB
ClpB homolog, mitochondrial AAA ATPase chaperonin.
   
 
 0.644
slc25a43
Solute carrier family 25 member 43; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.628
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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