STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmlheTrimethyllysine hydroxylase, epsilon. (464 aa)    
Predicted Functional Partners:
LOC111585233
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.684
LOC111572729
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.684
aifm2
Apoptosis inducing factor mitochondria associated 2.
      
 0.673
cdkal1
CDK5 regulatory subunit associated protein 1-like 1.
      
 0.656
HADH
Hydroxyacyl-CoA dehydrogenase.
    
 0.620
cryl1
Crystallin, lambda 1.
    
 0.620
LOC111570983
3HCDH_N domain-containing protein.
    
 0.620
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
  
 0.617
LOC111587815
Uncharacterized protein.
      
 0.568
asns
Asparagine synthetase [glutamine-hydrolyzing].
  
 
 0.541
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.