Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
irx5Iroquois homeobox 5a. (452 aa)    
Predicted Functional Partners:
irx3
Iroquois homeobox 3a.
   
  
 0.629
LOC111580929
Short stature homeobox.
   
 
 0.485
ENSAOCP00000014014
Teashirt zinc finger homeobox 3b.
   
 0.469
hnf1b
HNF1 homeobox Ba.
    
 0.463
hnf1a
HNF1 homeobox a.
    
 0.437
foxn4
Forkhead box N4.
   
 
 0.431
LOC111574161
Teashirt zinc finger homeobox 1.
    
 0.430
sall1
Spalt-like transcription factor 1a.
      
 0.420
hhex
Homeobox domain-containing protein.
   
 
 0.407
hoxd10
Homeobox D10a.
    
 
 0.406
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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