lnx1 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lnx1

Ligand of numb-protein X 1. (783 aa)

Predicted Functional Partners:

rps27a

0.677

uba52

0.628

LOC111566873

0.628

ift57

0.595

ift172

0.588

ift80

0.586

traf3ip1

0.578

prkci

0.565

LOC111572559

0.565

pick1

0.557

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111566873	LOC111572559	ENSAOCP00000028617	ENSAOCP00000022993	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.499
LOC111566873	lnx1	ENSAOCP00000028617	ENSAOCP00000002133	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ligand of numb-protein X 1.	0.628
LOC111566873	prkci	ENSAOCP00000028617	ENSAOCP00000018249	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.499
LOC111566873	rps27a	ENSAOCP00000028617	ENSAOCP00000002842	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.994
LOC111566873	uba52	ENSAOCP00000028617	ENSAOCP00000002979	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.900
LOC111572559	LOC111566873	ENSAOCP00000022993	ENSAOCP00000028617	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.499
LOC111572559	lnx1	ENSAOCP00000022993	ENSAOCP00000002133	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Ligand of numb-protein X 1.	0.565
LOC111572559	prkci	ENSAOCP00000022993	ENSAOCP00000018249	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.901
LOC111572559	rps27a	ENSAOCP00000022993	ENSAOCP00000002842	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Ribosomal protein S27a.	0.613
LOC111572559	uba52	ENSAOCP00000022993	ENSAOCP00000002979	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.499
ift172	ift57	ENSAOCP00000021600	ENSAOCP00000017756	Intraflagellar transport 172.	Intraflagellar transport 57 homolog (Chlamydomonas).	0.996
ift172	ift80	ENSAOCP00000021600	ENSAOCP00000016024	Intraflagellar transport 172.	Intraflagellar transport 80 homolog (Chlamydomonas).	0.997
ift172	lnx1	ENSAOCP00000021600	ENSAOCP00000002133	Intraflagellar transport 172.	Ligand of numb-protein X 1.	0.588
ift172	traf3ip1	ENSAOCP00000021600	ENSAOCP00000020157	Intraflagellar transport 172.	TNF receptor-associated factor 3 interacting protein 1.	0.995
ift57	ift172	ENSAOCP00000017756	ENSAOCP00000021600	Intraflagellar transport 57 homolog (Chlamydomonas).	Intraflagellar transport 172.	0.996
ift57	ift80	ENSAOCP00000017756	ENSAOCP00000016024	Intraflagellar transport 57 homolog (Chlamydomonas).	Intraflagellar transport 80 homolog (Chlamydomonas).	0.997
ift57	lnx1	ENSAOCP00000017756	ENSAOCP00000002133	Intraflagellar transport 57 homolog (Chlamydomonas).	Ligand of numb-protein X 1.	0.595
ift57	traf3ip1	ENSAOCP00000017756	ENSAOCP00000020157	Intraflagellar transport 57 homolog (Chlamydomonas).	TNF receptor-associated factor 3 interacting protein 1.	0.996
ift80	ift172	ENSAOCP00000016024	ENSAOCP00000021600	Intraflagellar transport 80 homolog (Chlamydomonas).	Intraflagellar transport 172.	0.997
ift80	ift57	ENSAOCP00000016024	ENSAOCP00000017756	Intraflagellar transport 80 homolog (Chlamydomonas).	Intraflagellar transport 57 homolog (Chlamydomonas).	0.997