Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC111580704Sortilin related VPS10 domain containing receptor 3b. (1241 aa)    
Predicted Functional Partners:
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.650
LOC111587439
Sortilin.
    
 
 0.623
sort1
Sortilin.
    
 
 0.623
gak
Cyclin G associated kinase.
     
 0.582
aplp1
Amyloid beta (A4) precursor-like protein 1.
    
 0.551
LOC111588910
Nerve growth factor receptor a (TNFR superfamily, member 16).
    
 
 0.492
LOC111570544
Uncharacterized protein.
    
 
 0.427
vps26b
VPS26, retromer complex component B.
    
 
 0.427
vps26a
VPS26, retromer complex component A.
    
 
 0.427
nts
Neurotensin.
   
 
 0.416
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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