Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
scfd2Sec1 family domain containing 2; Belongs to the STXBP/unc-18/SEC1 family. (691 aa)    
Predicted Functional Partners:
rint1
RAD50 interactor 1.
   
 
 0.984
stx18
Syntaxin 18.
    
 
 0.983
ENSAOCP00000014807
Uncharacterized protein.
   
 
 0.980
zw10
Zw10 kinetochore protein.
    
 
 0.963
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
   
   0.960
napg
N-ethylmaleimide-sensitive factor attachment protein, gamma b.
    
   0.937
cunh19orf25
Si:ch73-238c9.1.
    
 
 0.924
vamp4
Vesicle-associated membrane protein 4.
    
   0.906
ENSAOCP00000015996
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.886
LOC111582677
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.886
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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