LOC111578993 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111578993

Uncharacterized protein. (262 aa)

Predicted Functional Partners:

pdhb

0.583

gldc

0.583

LOC111565528

0.520

nadk

0.517

bckdhb

0.513

LOC111571135

0.506

LOC111582522

0.506

oxa1l

0.449

ENSAOCP00000013619

0.444

ENSAOCP00000008674

0.437

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAOCP00000008674	ENSAOCP00000013619	ENSAOCP00000008674	ENSAOCP00000013619	Transmembrane protein 126A.	Uncharacterized protein.	0.666
ENSAOCP00000008674	LOC111578993	ENSAOCP00000008674	ENSAOCP00000002189	Transmembrane protein 126A.	Uncharacterized protein.	0.437
ENSAOCP00000013619	ENSAOCP00000008674	ENSAOCP00000013619	ENSAOCP00000008674	Uncharacterized protein.	Transmembrane protein 126A.	0.666
ENSAOCP00000013619	LOC111578993	ENSAOCP00000013619	ENSAOCP00000002189	Uncharacterized protein.	Uncharacterized protein.	0.444
LOC111565528	LOC111578993	ENSAOCP00000018305	ENSAOCP00000002189	NAD kinase b.	Uncharacterized protein.	0.520
LOC111565528	nadk	ENSAOCP00000018305	ENSAOCP00000026254	NAD kinase b.	NAD kinase a.	0.901
LOC111571135	LOC111578993	ENSAOCP00000010359	ENSAOCP00000002189	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Uncharacterized protein.	0.506
LOC111571135	bckdhb	ENSAOCP00000010359	ENSAOCP00000019327	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Branched chain keto acid dehydrogenase E1 subunit beta.	0.766
LOC111571135	gldc	ENSAOCP00000010359	ENSAOCP00000029101	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.991
LOC111571135	pdhb	ENSAOCP00000010359	ENSAOCP00000025191	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.761
LOC111578993	ENSAOCP00000008674	ENSAOCP00000002189	ENSAOCP00000008674	Uncharacterized protein.	Transmembrane protein 126A.	0.437
LOC111578993	ENSAOCP00000013619	ENSAOCP00000002189	ENSAOCP00000013619	Uncharacterized protein.	Uncharacterized protein.	0.444
LOC111578993	LOC111565528	ENSAOCP00000002189	ENSAOCP00000018305	Uncharacterized protein.	NAD kinase b.	0.520
LOC111578993	LOC111571135	ENSAOCP00000002189	ENSAOCP00000010359	Uncharacterized protein.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.506
LOC111578993	LOC111582522	ENSAOCP00000002189	ENSAOCP00000022002	Uncharacterized protein.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.506
LOC111578993	bckdhb	ENSAOCP00000002189	ENSAOCP00000019327	Uncharacterized protein.	Branched chain keto acid dehydrogenase E1 subunit beta.	0.513
LOC111578993	gldc	ENSAOCP00000002189	ENSAOCP00000029101	Uncharacterized protein.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.583
LOC111578993	nadk	ENSAOCP00000002189	ENSAOCP00000026254	Uncharacterized protein.	NAD kinase a.	0.517
LOC111578993	oxa1l	ENSAOCP00000002189	ENSAOCP00000024116	Uncharacterized protein.	OXA1L mitochondrial inner membrane protein.	0.449
LOC111578993	pdhb	ENSAOCP00000002189	ENSAOCP00000025191	Uncharacterized protein.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.583