Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111577055Uncharacterized protein. (356 aa)    
Predicted Functional Partners:
LOC111577060
Uncharacterized protein.
   
  0.885
nfyc
Nuclear transcription factor Y, gamma.
    
   0.752
LOC111580057
Peptidase S1 domain-containing protein.
   
  
 0.505
cetp
Cholesteryl ester transfer protein, plasma.
      
 0.469
LOC111562605
Uncharacterized protein.
   
  
 0.434
apof
Apolipoprotein F.
   
  
 0.431
mgst1
Microsomal glutathione S-transferase 1.2.
   
  
 0.422
LOC111571376
Lecithin-cholesterol acyltransferase.
   
  
 0.420
LCAT
Lecithin-cholesterol acyltransferase.
   
  
 0.420
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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