Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trim54Tripartite motif containing 54. (339 aa)    
Predicted Functional Partners:
bhlhe22
Basic helix-loop-helix family, member e22.
      
 0.613
trim23
Tripartite motif containing 23.
    
 0.585
LOC111582054
Zgc:100920.
      
 0.543
LOC111574214
Sodium/potassium transporting ATPase interacting 4.
      
 0.543
RNF207
Ring finger protein 207.
      
 0.515
sqstm1
Sequestosome 1.
    
 0.509
trim33
Tripartite motif containing 33.
    
 
 0.482
LOC111575075
Uridine-cytidine kinase; Belongs to the uridine kinase family.
    
 0.458
LOC111582051
Uridine-cytidine kinase; Belongs to the uridine kinase family.
    
 0.458
uckl1
Uridine-cytidine kinase; Belongs to the uridine kinase family.
    
 0.458
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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