Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111564302Uncharacterized protein. (203 aa)    
Predicted Functional Partners:
c9orf72
Zgc:100846.
    
 0.923
LOC111583301
Uncharacterized protein.
  
  
 
0.900
uso1
USO1 vesicle transport factor.
   
 0.885
stx5
Syntaxin 5A; Belongs to the syntaxin family.
   
 0.872
trappc3
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
   
 0.863
tmed10
Transmembrane p24 trafficking protein 10.
   
 0.848
gbf1
Golgi brefeldin A resistant guanine nucleotide exchange factor 1.
    
 0.841
chm
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.839
bet1
Bet1 golgi vesicular membrane trafficking protein.
    
 0.838
trappc8
Trafficking protein particle complex 8.
    
 0.836
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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