Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111563084Matrin-type domain-containing protein. (1595 aa)    
Predicted Functional Partners:
sf3b1
Splicing factor 3b, subunit 1.
   
   0.733
SENP6
SUMO specific peptidase 6.
   
   0.715
nipbl
Nipped-B protein.
   
  0.702
LOC111566828
Nipped-B protein.
   
  0.702
u2surp
U2 snRNP-associated SURP domain containing.
   
    0.642
LOC111580630
Zgc:163098.
   
    0.642
pcm1
Pericentriolar material 1.
  
   0.612
ZFC3H1
Zinc finger C3H1-type containing.
   
   0.579
LOC111582339
PHD finger protein 3.
   
    0.562
thoc2
THO complex 2.
   
   0.545
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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