Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111566665Uncharacterized protein. (372 aa)    
Predicted Functional Partners:
atoh7
Atonal bHLH transcription factor 7.
      
 0.636
foxn4
Forkhead box N4.
      
 0.565
gap43
Growth associated protein 43.
      
 0.544
wdr20
WD repeat domain 20a.
    
   0.528
LOC111569972
DM1 locus, WD repeat containing.
    
   0.528
LOC111569888
Nucleoredoxin like 1.
   
  
 0.513
ptf1a
Pancreas associated transcription factor 1a.
      
 0.496
bhlhe23
Basic helix-loop-helix family, member e23.
   
  
 0.494
usp46
Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family.
    
   0.491
usp12
Ubiquitin specific peptidase 12a; Belongs to the peptidase C19 family.
    
   0.491
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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