Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111586431Uncharacterized protein. (531 aa)    
Predicted Functional Partners:
snrnp48
Small nuclear ribonucleoprotein 48 (U11/U12).
   
 0.997
snrnp25
Small nuclear ribonucleoprotein 25.
    
 0.997
zmat5
Zinc finger, matrin-type 5.
   
 0.987
Snrnp35
Small nuclear ribonucleoprotein 35 (U11/U12).
   
 0.975
zrsr2
Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.
    
  0.972
snrpg
Small nuclear ribonucleoprotein G.
    
  0.968
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.966
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
    
  0.952
snrnp70
Small nuclear ribonucleoprotein 70 (U1).
   
 0.948
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
    
 0.933
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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