Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111586425BTB domain-containing protein. (511 aa)    
Predicted Functional Partners:
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.682
LOC111579028
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.682
LOC111565194
COMM domain containing 5.
  
  
  0.625
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.580
commd9
COMM domain containing 9.
     
  0.546
commd6
COMM domain containing 6.
     
  0.530
commd7
COMM domain containing 7.
     
  0.530
ccdc22
Coiled-coil domain containing 22.
     
  0.502
LOC111567495
Ubiquitin-like domain-containing protein.
     
 0.496
LOC111584854
NEDD8 ubiquitin like modifier.
     
 0.496
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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