LSM14B protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF4ENIF1	LOC111562609	ENSAOCP00000006920	ENSAOCP00000003027	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.905
EIF4ENIF1	LOC111564218	ENSAOCP00000006920	ENSAOCP00000004218	Eukaryotic translation initiation factor 4E nuclear import factor 1.	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	0.905
EIF4ENIF1	LOC111577675	ENSAOCP00000006920	ENSAOCP00000005597	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Uncharacterized protein.	0.547
EIF4ENIF1	LOC111587610	ENSAOCP00000006920	ENSAOCP00000020990	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Enhancer of mRNA decapping 3 homolog (S. cerevisiae).	0.547
EIF4ENIF1	LSM14B	ENSAOCP00000006920	ENSAOCP00000003401	Eukaryotic translation initiation factor 4E nuclear import factor 1.	LSM family member 14B.	0.913
EIF4ENIF1	ddx6	ENSAOCP00000006920	ENSAOCP00000017707	Eukaryotic translation initiation factor 4E nuclear import factor 1.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.905
EIF4ENIF1	edc4	ENSAOCP00000006920	ENSAOCP00000022182	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Enhancer of mRNA decapping 4.	0.611
LOC111562609	EIF4ENIF1	ENSAOCP00000003027	ENSAOCP00000006920	Uncharacterized protein; Belongs to the DEAD box helicase family.	Eukaryotic translation initiation factor 4E nuclear import factor 1.	0.905
LOC111562609	LOC111564218	ENSAOCP00000003027	ENSAOCP00000004218	Uncharacterized protein; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	0.900
LOC111562609	LOC111577675	ENSAOCP00000003027	ENSAOCP00000005597	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.939
LOC111562609	LOC111587610	ENSAOCP00000003027	ENSAOCP00000020990	Uncharacterized protein; Belongs to the DEAD box helicase family.	Enhancer of mRNA decapping 3 homolog (S. cerevisiae).	0.939
LOC111562609	LSM14B	ENSAOCP00000003027	ENSAOCP00000003401	Uncharacterized protein; Belongs to the DEAD box helicase family.	LSM family member 14B.	0.872
LOC111562609	dcp1a	ENSAOCP00000003027	ENSAOCP00000030312	Uncharacterized protein; Belongs to the DEAD box helicase family.	Decapping mRNA 1A.	0.976
LOC111562609	dcp1b	ENSAOCP00000003027	ENSAOCP00000032101	Uncharacterized protein; Belongs to the DEAD box helicase family.	Decapping mRNA 1B.	0.954
LOC111562609	dcp2	ENSAOCP00000003027	ENSAOCP00000022626	Uncharacterized protein; Belongs to the DEAD box helicase family.	Decapping mRNA 2.	0.958
LOC111562609	ddx6	ENSAOCP00000003027	ENSAOCP00000017707	Uncharacterized protein; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.901
LOC111562609	edc4	ENSAOCP00000003027	ENSAOCP00000022182	Uncharacterized protein; Belongs to the DEAD box helicase family.	Enhancer of mRNA decapping 4.	0.976
LOC111564218	EIF4ENIF1	ENSAOCP00000004218	ENSAOCP00000006920	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	Eukaryotic translation initiation factor 4E nuclear import factor 1.	0.905
LOC111564218	LOC111562609	ENSAOCP00000004218	ENSAOCP00000003027	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.900
LOC111564218	LOC111577675	ENSAOCP00000004218	ENSAOCP00000005597	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.939