Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cdk5rap3CDK5 regulatory subunit associated protein 3. (503 aa)    
Predicted Functional Partners:
ufl1
UFM1-specific ligase 1.
   
 
 0.996
DDRGK1
DDRGK domain containing 1.
   
 
 0.983
UFC1
Ubiquitin-fold modifier conjugating enzyme 1.
   
 
 0.970
ufm1
Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes.
    
 
 0.968
fkbp6
Peptidylprolyl isomerase.
    
   0.958
ltn1
Listerin E3 ubiquitin protein ligase 1.
    
 
 0.804
LOC111582895
Cyclin-dependent kinase inhibitor 2A/B (p15, inhibits CDK4).
    
   0.780
srprb
SRP receptor subunit beta.
    
 
 0.768
snx11
PX domain-containing protein.
      
 0.741
ufsp2
Ufm1-specific peptidase 2.
   
  
 0.731
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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