ggcx protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ggcx

Gamma-glutamyl carboxylase. (765 aa)

Predicted Functional Partners:

LOC111581582

0.991

f2

0.990

proc

0.976

pros1

0.974

LOC111578955

0.941

LOC111569366

0.941

LOC111578954

0.941

vkorc1l1

0.937

LOC111585772

0.921

fam136a

0.907

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111569366	LOC111578954	ENSAOCP00000008190	ENSAOCP00000022712	NAD(P)H dehydrogenase, quinone 1.	Flavodoxin_2 domain-containing protein.	0.902
LOC111569366	LOC111578955	ENSAOCP00000008190	ENSAOCP00000004896	NAD(P)H dehydrogenase, quinone 1.	Flavodoxin_2 domain-containing protein.	0.902
LOC111569366	LOC111581582	ENSAOCP00000008190	ENSAOCP00000030721	NAD(P)H dehydrogenase, quinone 1.	Vitamin K epoxide reductase complex, subunit 1.	0.941
LOC111569366	ggcx	ENSAOCP00000008190	ENSAOCP00000003532	NAD(P)H dehydrogenase, quinone 1.	Gamma-glutamyl carboxylase.	0.941
LOC111569366	vkorc1l1	ENSAOCP00000008190	ENSAOCP00000015070	NAD(P)H dehydrogenase, quinone 1.	Vitamin K epoxide reductase complex, subunit 1-like 1.	0.921
LOC111578954	LOC111569366	ENSAOCP00000022712	ENSAOCP00000008190	Flavodoxin_2 domain-containing protein.	NAD(P)H dehydrogenase, quinone 1.	0.902
LOC111578954	LOC111578955	ENSAOCP00000022712	ENSAOCP00000004896	Flavodoxin_2 domain-containing protein.	Flavodoxin_2 domain-containing protein.	0.900
LOC111578954	LOC111581582	ENSAOCP00000022712	ENSAOCP00000030721	Flavodoxin_2 domain-containing protein.	Vitamin K epoxide reductase complex, subunit 1.	0.941
LOC111578954	ggcx	ENSAOCP00000022712	ENSAOCP00000003532	Flavodoxin_2 domain-containing protein.	Gamma-glutamyl carboxylase.	0.941
LOC111578954	vkorc1l1	ENSAOCP00000022712	ENSAOCP00000015070	Flavodoxin_2 domain-containing protein.	Vitamin K epoxide reductase complex, subunit 1-like 1.	0.921
LOC111578955	LOC111569366	ENSAOCP00000004896	ENSAOCP00000008190	Flavodoxin_2 domain-containing protein.	NAD(P)H dehydrogenase, quinone 1.	0.902
LOC111578955	LOC111578954	ENSAOCP00000004896	ENSAOCP00000022712	Flavodoxin_2 domain-containing protein.	Flavodoxin_2 domain-containing protein.	0.900
LOC111578955	LOC111581582	ENSAOCP00000004896	ENSAOCP00000030721	Flavodoxin_2 domain-containing protein.	Vitamin K epoxide reductase complex, subunit 1.	0.941
LOC111578955	ggcx	ENSAOCP00000004896	ENSAOCP00000003532	Flavodoxin_2 domain-containing protein.	Gamma-glutamyl carboxylase.	0.941
LOC111578955	vkorc1l1	ENSAOCP00000004896	ENSAOCP00000015070	Flavodoxin_2 domain-containing protein.	Vitamin K epoxide reductase complex, subunit 1-like 1.	0.921
LOC111581582	LOC111569366	ENSAOCP00000030721	ENSAOCP00000008190	Vitamin K epoxide reductase complex, subunit 1.	NAD(P)H dehydrogenase, quinone 1.	0.941
LOC111581582	LOC111578954	ENSAOCP00000030721	ENSAOCP00000022712	Vitamin K epoxide reductase complex, subunit 1.	Flavodoxin_2 domain-containing protein.	0.941
LOC111581582	LOC111578955	ENSAOCP00000030721	ENSAOCP00000004896	Vitamin K epoxide reductase complex, subunit 1.	Flavodoxin_2 domain-containing protein.	0.941
LOC111581582	f2	ENSAOCP00000030721	ENSAOCP00000015523	Vitamin K epoxide reductase complex, subunit 1.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.699
LOC111581582	ggcx	ENSAOCP00000030721	ENSAOCP00000003532	Vitamin K epoxide reductase complex, subunit 1.	Gamma-glutamyl carboxylase.	0.991