usp1 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111566873	fancc	ENSAOCP00000028617	ENSAOCP00000020351	Ubiquitin A-52 residue ribosomal protein fusion product 1.	FA complementation group C.	0.530
LOC111566873	fancd2	ENSAOCP00000028617	ENSAOCP00000028132	Ubiquitin A-52 residue ribosomal protein fusion product 1.	FA complementation group D2.	0.902
LOC111566873	fanci	ENSAOCP00000028617	ENSAOCP00000028323	Ubiquitin A-52 residue ribosomal protein fusion product 1.	FA complementation group I.	0.889
LOC111566873	fancl	ENSAOCP00000028617	ENSAOCP00000016369	Ubiquitin A-52 residue ribosomal protein fusion product 1.	FA complementation group L.	0.551
LOC111566873	klhdc2	ENSAOCP00000028617	ENSAOCP00000027680	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Kelch domain containing 2.	0.412
LOC111566873	pcna	ENSAOCP00000028617	ENSAOCP00000002571	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.903
LOC111566873	rad18	ENSAOCP00000028617	ENSAOCP00000020406	Ubiquitin A-52 residue ribosomal protein fusion product 1.	RAD18 E3 ubiquitin protein ligase.	0.867
LOC111566873	rps27a	ENSAOCP00000028617	ENSAOCP00000002842	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.999
LOC111566873	uba52	ENSAOCP00000028617	ENSAOCP00000002979	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.900
LOC111566873	usp1	ENSAOCP00000028617	ENSAOCP00000003558	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin carboxyl-terminal hydrolase.	0.886
fancc	LOC111566873	ENSAOCP00000020351	ENSAOCP00000028617	FA complementation group C.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.530
fancc	fancd2	ENSAOCP00000020351	ENSAOCP00000028132	FA complementation group C.	FA complementation group D2.	0.998
fancc	fanci	ENSAOCP00000020351	ENSAOCP00000028323	FA complementation group C.	FA complementation group I.	0.998
fancc	fancl	ENSAOCP00000020351	ENSAOCP00000016369	FA complementation group C.	FA complementation group L.	0.999
fancc	pcna	ENSAOCP00000020351	ENSAOCP00000002571	FA complementation group C.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.487
fancc	rad18	ENSAOCP00000020351	ENSAOCP00000020406	FA complementation group C.	RAD18 E3 ubiquitin protein ligase.	0.576
fancc	rps27a	ENSAOCP00000020351	ENSAOCP00000002842	FA complementation group C.	Ribosomal protein S27a.	0.691
fancc	uba52	ENSAOCP00000020351	ENSAOCP00000002979	FA complementation group C.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.530
fancc	usp1	ENSAOCP00000020351	ENSAOCP00000003558	FA complementation group C.	Ubiquitin carboxyl-terminal hydrolase.	0.853
fancd2	LOC111566873	ENSAOCP00000028132	ENSAOCP00000028617	FA complementation group D2.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.902