hoxb3 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

hoxb3

Homeobox domain-containing protein. (288 aa)

Predicted Functional Partners:

hoxa5

0.792

HOXA7

0.675

LOC111568218

0.661

LOC111570271

0.523

hoxc9

0.471

hoxb5

0.444

foxn1

0.435

foxn4

0.435

LOC111570137

0.434

pbx3

0.434

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HOXA7	LOC111568218	ENSAOCP00000015732	ENSAOCP00000025535	Homeobox A7.	Homeobox domain-containing protein.	0.407
HOXA7	LOC111570137	ENSAOCP00000015732	ENSAOCP00000006354	Homeobox A7.	Pre-B-cell leukemia homeobox 1a.	0.456
HOXA7	LOC111570271	ENSAOCP00000015732	ENSAOCP00000029938	Homeobox A7.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.861
HOXA7	hoxa5	ENSAOCP00000015732	ENSAOCP00000029917	Homeobox A7.	Homeobox A5a.	0.467
HOXA7	hoxb3	ENSAOCP00000015732	ENSAOCP00000003565	Homeobox A7.	Homeobox domain-containing protein.	0.675
HOXA7	hoxb5	ENSAOCP00000015732	ENSAOCP00000021811	Homeobox A7.	Homeobox B5b.	0.731
HOXA7	hoxc9	ENSAOCP00000015732	ENSAOCP00000018869	Homeobox A7.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.437
HOXA7	pbx3	ENSAOCP00000015732	ENSAOCP00000015286	Homeobox A7.	Homeobox domain-containing protein.	0.456
LOC111568218	HOXA7	ENSAOCP00000025535	ENSAOCP00000015732	Homeobox domain-containing protein.	Homeobox A7.	0.407
LOC111568218	hoxb3	ENSAOCP00000025535	ENSAOCP00000003565	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.661
LOC111568218	hoxb5	ENSAOCP00000025535	ENSAOCP00000021811	Homeobox domain-containing protein.	Homeobox B5b.	0.493
LOC111570137	HOXA7	ENSAOCP00000006354	ENSAOCP00000015732	Pre-B-cell leukemia homeobox 1a.	Homeobox A7.	0.456
LOC111570137	LOC111570271	ENSAOCP00000006354	ENSAOCP00000029938	Pre-B-cell leukemia homeobox 1a.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.523
LOC111570137	hoxb3	ENSAOCP00000006354	ENSAOCP00000003565	Pre-B-cell leukemia homeobox 1a.	Homeobox domain-containing protein.	0.434
LOC111570137	hoxb5	ENSAOCP00000006354	ENSAOCP00000021811	Pre-B-cell leukemia homeobox 1a.	Homeobox B5b.	0.741
LOC111570137	hoxc9	ENSAOCP00000006354	ENSAOCP00000018869	Pre-B-cell leukemia homeobox 1a.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.696
LOC111570271	HOXA7	ENSAOCP00000029938	ENSAOCP00000015732	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Homeobox A7.	0.861
LOC111570271	LOC111570137	ENSAOCP00000029938	ENSAOCP00000006354	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Pre-B-cell leukemia homeobox 1a.	0.523
LOC111570271	hoxb3	ENSAOCP00000029938	ENSAOCP00000003565	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Homeobox domain-containing protein.	0.523
LOC111570271	hoxb5	ENSAOCP00000029938	ENSAOCP00000021811	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Homeobox B5b.	0.423