plgrkt protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

plgrkt

Plasminogen receptor, C-terminal lysine transmembrane protein. (149 aa)

Predicted Functional Partners:

plg

0.652

suox

0.618

tgfbrap1

0.600

ascc1

0.548

hpn

0.517

tcea3

0.516

gng10

0.502

mien1

0.488

LOC111571035

0.484

ENSAOCP00000016692

0.484

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAOCP00000016692	plgrkt	ENSAOCP00000016692	ENSAOCP00000003571	ARF7EP_C domain-containing protein.	Plasminogen receptor, C-terminal lysine transmembrane protein.	0.484
ENSAOCP00000016692	suox	ENSAOCP00000016692	ENSAOCP00000020499	ARF7EP_C domain-containing protein.	Sulfite oxidase.	0.602
LOC111571035	plgrkt	ENSAOCP00000012966	ENSAOCP00000003571	ADP-ribosylation factor-like 14 effector protein.	Plasminogen receptor, C-terminal lysine transmembrane protein.	0.484
LOC111571035	suox	ENSAOCP00000012966	ENSAOCP00000020499	ADP-ribosylation factor-like 14 effector protein.	Sulfite oxidase.	0.602
ascc1	plgrkt	ENSAOCP00000005524	ENSAOCP00000003571	Activating signal cointegrator 1 complex subunit 1.	Plasminogen receptor, C-terminal lysine transmembrane protein.	0.548
ascc1	tcea3	ENSAOCP00000005524	ENSAOCP00000014061	Activating signal cointegrator 1 complex subunit 1.	Transcription elongation factor A (SII), 3.	0.408
gng10	mien1	ENSAOCP00000008075	ENSAOCP00000000562	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Selenoprotein W, 2b.	0.611
gng10	plgrkt	ENSAOCP00000008075	ENSAOCP00000003571	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Plasminogen receptor, C-terminal lysine transmembrane protein.	0.502
hpn	plgrkt	ENSAOCP00000005248	ENSAOCP00000003571	Hepsin; Belongs to the peptidase S1 family.	Plasminogen receptor, C-terminal lysine transmembrane protein.	0.517
mien1	gng10	ENSAOCP00000000562	ENSAOCP00000008075	Selenoprotein W, 2b.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.611
mien1	plgrkt	ENSAOCP00000000562	ENSAOCP00000003571	Selenoprotein W, 2b.	Plasminogen receptor, C-terminal lysine transmembrane protein.	0.488
plg	plgrkt	ENSAOCP00000003774	ENSAOCP00000003571	Plasminogen; Plasmin dissolves the fibrin of blood clots and acts as a proteolytic factor in a variety of other processes including embryonic development, tissue remodeling, tumor invasion, and inflammation. In ovulation, weakens the walls of the Graafian follicle. It activates the urokinase-type plasminogen activator, collagenases and several complement zymogens, such as C1 and C5. Cleavage of fibronectin and laminin leads to cell detachment and apoptosis. Also cleaves fibrin, thrombospondin and von Willebrand factor. Its role in tissue remodeling and tumor invasion may be modulated b [...]	Plasminogen receptor, C-terminal lysine transmembrane protein.	0.652
plgrkt	ENSAOCP00000016692	ENSAOCP00000003571	ENSAOCP00000016692	Plasminogen receptor, C-terminal lysine transmembrane protein.	ARF7EP_C domain-containing protein.	0.484
plgrkt	LOC111571035	ENSAOCP00000003571	ENSAOCP00000012966	Plasminogen receptor, C-terminal lysine transmembrane protein.	ADP-ribosylation factor-like 14 effector protein.	0.484
plgrkt	ascc1	ENSAOCP00000003571	ENSAOCP00000005524	Plasminogen receptor, C-terminal lysine transmembrane protein.	Activating signal cointegrator 1 complex subunit 1.	0.548
plgrkt	gng10	ENSAOCP00000003571	ENSAOCP00000008075	Plasminogen receptor, C-terminal lysine transmembrane protein.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.502
plgrkt	hpn	ENSAOCP00000003571	ENSAOCP00000005248	Plasminogen receptor, C-terminal lysine transmembrane protein.	Hepsin; Belongs to the peptidase S1 family.	0.517
plgrkt	mien1	ENSAOCP00000003571	ENSAOCP00000000562	Plasminogen receptor, C-terminal lysine transmembrane protein.	Selenoprotein W, 2b.	0.488
plgrkt	plg	ENSAOCP00000003571	ENSAOCP00000003774	Plasminogen receptor, C-terminal lysine transmembrane protein.	Plasminogen; Plasmin dissolves the fibrin of blood clots and acts as a proteolytic factor in a variety of other processes including embryonic development, tissue remodeling, tumor invasion, and inflammation. In ovulation, weakens the walls of the Graafian follicle. It activates the urokinase-type plasminogen activator, collagenases and several complement zymogens, such as C1 and C5. Cleavage of fibronectin and laminin leads to cell detachment and apoptosis. Also cleaves fibrin, thrombospondin and von Willebrand factor. Its role in tissue remodeling and tumor invasion may be modulated b [...]	0.652
plgrkt	suox	ENSAOCP00000003571	ENSAOCP00000020499	Plasminogen receptor, C-terminal lysine transmembrane protein.	Sulfite oxidase.	0.618