Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ric8aRIC8 guanine nucleotide exchange factor A. (601 aa)    
Predicted Functional Partners:
ncs1
Neuronal calcium sensor 1a.
    
 
 0.925
dctn2
Dynactin 2 (p50).
    
 
 0.775
dctn1
Dynactin 1a.
   
   0.768
LOC111567642
Uncharacterized protein.
    
 
 0.700
rabif
RAB interacting factor.
      
 0.687
LOC111567096
Wolfram syndrome 1a (wolframin).
   
    0.661
wfs1
Wolfram syndrome 1b (wolframin).
   
    0.661
gna12
G protein subunit alpha 12.
    
 
 0.642
LOC111586729
Guanine nucleotide binding protein (G protein), alpha 13b.
    
 
 0.642
LOC111567436
Uncharacterized protein.
    
 
 0.642
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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