Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
LOC111585088Leiomodin 1b (smooth muscle). (662 aa)    
Predicted Functional Partners:
LOC111564421
RNA binding protein, mRNA processing factor 2b.
    
 0.702
nkain1
Sodium/potassium transporting ATPase interacting 1.
      
 0.701
LOC111563621
Uncharacterized protein.
     
 0.689
LOC111584990
Myosin, light chain 1, alkali; skeletal, fast.
   
 
 0.634
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
      
 0.612
LYPD6
LY6/PLAUR domain containing 6.
      
 0.612
dgke
Diacylglycerol kinase.
      
 0.594
LOC111565883
Myosin, light chain 9a, regulatory.
   
 
 0.584
LOC111569337
Uncharacterized protein.
   
 
 0.584
LOC111579535
Uncharacterized protein.
   
 
 0.584
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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