Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
simc1Si:ch211-199b20.3. (696 aa)    
Predicted Functional Partners:
LOC111564367
CAP-ZIP_m domain-containing protein.
    
 
 0.786
smc6
Si:dkey-119f1.1.
    
   0.755
LOC111578608
Structural maintenance of chromosomes 6.
    
   0.755
LOC111589063
Melanocortin 2 receptor.
     
 0.703
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.700
LOC111583507
zf-RING-like domain-containing protein.
    
   0.691
LOC111583506
NSE1 homolog, SMC5-SMC6 complex component.
    
   0.691
rab24
RAB24, member RAS oncogene family.
   
 0.627
LOC111574366
Cyclin D3; Belongs to the cyclin family.
    
 
 0.617
LOC111572651
Un-named sa821.
      
 0.614
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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