Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ptpraProtein tyrosine phosphatase receptor type A. (844 aa)    
Predicted Functional Partners:
grb2
Growth factor receptor-bound protein 2b.
    
 0.980
LOC111568275
Receptor-type tyrosine-protein phosphatase.
    
   0.886
LOC111566886
Receptor-type tyrosine-protein phosphatase.
    
   0.886
ubox5
U-box domain containing 5.
      
 0.831
pts
6-pyruvoyl tetrahydrobiopterin synthase.
    
 
 0.774
ENSAOCP00000015835
Protein tyrosine phosphatase receptor type Fb.
 
 
 
 0.762
znf367
Zinc finger protein 367.
      
 0.736
mrps26
Mitochondrial ribosomal protein S26.
      
 0.734
uvrag
UV radiation resistance associated gene.
    
   0.728
znf366
Zinc finger protein 366.
      
 0.724
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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