Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111583196Interferon regulatory factor 2 binding protein 1. (447 aa)    
Predicted Functional Partners:
irf2
Interferon regulatory factor 2.
    
 
 0.673
HNRNPUL1
Heterogeneous nuclear ribonucleoprotein U like 1.
    
 
 0.588
LOC111588717
Vestigial-like family member 4a.
    
 
 0.563
vgll4
Vestigial-like family member 4b.
    
 
 0.563
LOC111585114
Vestigial like 4 like.
    
 
 0.423
KCTD15
Potassium channel tetramerization domain containing 15.
   
  
 0.419
kctd15
Potassium channel tetramerization domain containing 15.
   
  
 0.419
dcp1a
Decapping mRNA 1A.
      
 0.414
AXL
AXL receptor tyrosine kinase.
      
 0.403
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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