Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111581205Cd8 beta. (202 aa)    
Predicted Functional Partners:
cd8a
Ig-like domain-containing protein.
   
 
 0.978
LOC111562763
Ig-like domain-containing protein; Belongs to the MHC class I family.
     
 0.905
LOC111580938
Major histocompatibility complex class I ZKA; Belongs to the MHC class I family.
     
 0.903
ENSAOCP00000001451
Ig-like domain-containing protein; Belongs to the MHC class I family.
     
  0.900
LOC111562463
Ig-like domain-containing protein; Belongs to the MHC class I family.
     
  0.900
LOC111562465
Ig-like domain-containing protein; Belongs to the MHC class I family.
     
  0.900
LOC111580525
Ig-like domain-containing protein; Belongs to the MHC class I family.
     
  0.900
ENSAOCP00000024155
Ig-like domain-containing protein; Belongs to the MHC class I family.
     
  0.900
LOC111569482
CD4-1 molecule.
      
 0.704
lck
Tyrosine-protein kinase.
   
  
 0.559
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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