TOMM40L protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TOMM40L

Translocase of outer mitochondrial membrane 40 like. (331 aa)

Predicted Functional Partners:

TOMM7

0.989

tomm70

0.985

TOMM20

0.976

LOC111586456

0.976

pink1

0.962

tomm22

0.962

ENSAOCP00000016678

0.906

LOC111568756

0.903

LOC111562602

0.902

tomm40

0.902

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAOCP00000016678	LOC111562602	ENSAOCP00000016678	ENSAOCP00000002998	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Translocase of outer mitochondrial membrane 40 homolog, like.	0.906
ENSAOCP00000016678	LOC111586456	ENSAOCP00000016678	ENSAOCP00000021375	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Translocase of outer mitochondrial membrane 20b.	0.505
ENSAOCP00000016678	TOMM20	ENSAOCP00000016678	ENSAOCP00000000492	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Translocase of outer mitochondrial membrane 20.	0.505
ENSAOCP00000016678	TOMM40L	ENSAOCP00000016678	ENSAOCP00000004076	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Translocase of outer mitochondrial membrane 40 like.	0.906
ENSAOCP00000016678	TOMM7	ENSAOCP00000016678	ENSAOCP00000032168	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Translocase of outer mitochondrial membrane 7.	0.834
ENSAOCP00000016678	tomm22	ENSAOCP00000016678	ENSAOCP00000016073	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Translocase of outer mitochondrial membrane 22 homolog (yeast).	0.936
ENSAOCP00000016678	tomm40	ENSAOCP00000016678	ENSAOCP00000004184	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Translocase of outer mitochondrial membrane 40 homolog (yeast).	0.906
ENSAOCP00000016678	tomm70	ENSAOCP00000016678	ENSAOCP00000026637	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).	0.906
LOC111562602	ENSAOCP00000016678	ENSAOCP00000002998	ENSAOCP00000016678	Translocase of outer mitochondrial membrane 40 homolog, like.	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.906
LOC111562602	LOC111568756	ENSAOCP00000002998	ENSAOCP00000011738	Translocase of outer mitochondrial membrane 40 homolog, like.	E3 ubiquitin-protein ligase; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.	0.903
LOC111562602	LOC111586456	ENSAOCP00000002998	ENSAOCP00000021375	Translocase of outer mitochondrial membrane 40 homolog, like.	Translocase of outer mitochondrial membrane 20b.	0.976
LOC111562602	TOMM20	ENSAOCP00000002998	ENSAOCP00000000492	Translocase of outer mitochondrial membrane 40 homolog, like.	Translocase of outer mitochondrial membrane 20.	0.976
LOC111562602	TOMM40L	ENSAOCP00000002998	ENSAOCP00000004076	Translocase of outer mitochondrial membrane 40 homolog, like.	Translocase of outer mitochondrial membrane 40 like.	0.902
LOC111562602	TOMM7	ENSAOCP00000002998	ENSAOCP00000032168	Translocase of outer mitochondrial membrane 40 homolog, like.	Translocase of outer mitochondrial membrane 7.	0.989
LOC111562602	pink1	ENSAOCP00000002998	ENSAOCP00000015918	Translocase of outer mitochondrial membrane 40 homolog, like.	PTEN induced kinase 1.	0.962
LOC111562602	tomm22	ENSAOCP00000002998	ENSAOCP00000016073	Translocase of outer mitochondrial membrane 40 homolog, like.	Translocase of outer mitochondrial membrane 22 homolog (yeast).	0.962
LOC111562602	tomm40	ENSAOCP00000002998	ENSAOCP00000004184	Translocase of outer mitochondrial membrane 40 homolog, like.	Translocase of outer mitochondrial membrane 40 homolog (yeast).	0.901
LOC111562602	tomm70	ENSAOCP00000002998	ENSAOCP00000026637	Translocase of outer mitochondrial membrane 40 homolog, like.	Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).	0.985
LOC111568756	LOC111562602	ENSAOCP00000011738	ENSAOCP00000002998	E3 ubiquitin-protein ligase; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.	Translocase of outer mitochondrial membrane 40 homolog, like.	0.903
LOC111568756	LOC111586456	ENSAOCP00000011738	ENSAOCP00000021375	E3 ubiquitin-protein ligase; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.	Translocase of outer mitochondrial membrane 20b.	0.903